Pharmacognosy Magazine

ORIGINAL ARTICLE
Year
: 2012  |  Volume : 8  |  Issue : 29  |  Page : 4--11

Application of deoxyribonucleic acid barcoding in Lauraceae plants


Zhen Liu1, Shi-Lin Chen2, Jing-Yuan Song2, Shou-Jun Zhang3, Ke-Li Chen5 
1 Department of Pharmacy, The 309th Hospital of Chinese People's Liberation Army, Beijing; Key Laboratory of Traditional Chinese Medicine Resource and Compound Prescription, Ministry of Education, Hubei University of Chinese Medicine, Wuhan, Republic of China
2 Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Peking Union Medical College, Beijing, Republic of China
3 Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Republic of China

Correspondence Address:
Ke-Li Chen
Key Laboratory of Traditional Chinese Medicine Resource and Compound Prescription, Ministry of Education, Hubei University of Chinese Medicine, Wuhan 430065
Republic of China

Background: This study aims to determine the candidate markers that can be used as DNA barcode in the Lauraceae family. Material and Methods: Polymerase chain reaction amplification, sequencing efficiency, differential intra- and interspecific divergences, DNA barcoding gap, and identification efficiency were used to evaluate the four different DNA sequences of psbA-trnH, matK, rbcL, and ITS2. We tested the discrimination ability of psbA-trnH in 68 plant samples belonging to 42 species from 11 distinct genera and found that the rate of successful identification with the psbA-trnH was 82.4% at the species level. However, the correct identification of matK and rbcL were only 30.9% and 25.0%, respectively, using BLAST1. The PCR amplification efficiency of the ITS2 region was poor; thus, ITS2 was not included in subsequent experiments. To verify the capacity of the identification of psbA-trnH in more samples, 175 samples belonging to 117 species from the experimental data and from the GenBank database of the Lauraceae family were tested. Results: Using the BLAST1 method, the identification efficiency were 84.0% and 92.3% at the species and genus level, respectively. Conclusion: Therefore, psbA-trnH is confirmed as a useful marker for differentiating closely related species within Lauraceae.


How to cite this article:
Liu Z, Chen SL, Song JY, Zhang SJ, Chen KL. Application of deoxyribonucleic acid barcoding in Lauraceae plants.Phcog Mag 2012;8:4-11


How to cite this URL:
Liu Z, Chen SL, Song JY, Zhang SJ, Chen KL. Application of deoxyribonucleic acid barcoding in Lauraceae plants. Phcog Mag [serial online] 2012 [cited 2019 Dec 9 ];8:4-11
Available from: http://www.phcog.com/article.asp?issn=0973-1296;year=2012;volume=8;issue=29;spage=4;epage=11;aulast=Liu;type=0